PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104104.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 249aa    MW: 27899.3 Da    PI: 7.8675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0586108123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F+++  L  H++ H
  XP_009104104.1  86 FECHYCFRNFPTSQALGGHQNAH 108
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.09E-682113No hitNo description
PfamPF139121.9E-585110IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9986113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDELDGERET KDFMNVESFS QLPFFRRPPS KDKSSKPIRL FGKYFTGGDY FGEDHSEINN  60
KKDKEKEEDQ TEDDGKDNSI NNNRRFECHY CFRNFPTSQA LGGHQNAHKR ERQLAKRNAS  120
SYFHHPDANL YGYHHYPSWS SGSLPAARFY GAGHTLGTSS SYGTRPNGSP FGLWRVPPSS  180
SSVKGSYNTD AGFTSHHDSY NNSTSPFLVG SQPHPPLHVG GSSAQNRMSS YGHGLSPSLK  240
DNVSLDLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104104.10.0PREDICTED: zinc finger protein GIS-like
SwissprotQ84WI02e-95GIS_ARATH; Zinc finger protein GIS
TrEMBLM4CGI41e-175M4CGI4_BRARP; Uncharacterized protein
STRINGBra003317.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-92C2H2 family protein